J3_11HV_004

3D structure

PDB id

11HV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 60S ribosomal subunit with eEF2 domain IV open

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UUGAAAAG*CG*CA

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_11HV_004 not in the Motif Atlas

Geometric match to J3_8GLP_025

Geometric discrepancy: 0.0494

The information below is about J3_8GLP_025

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_68715.3

Basepair signature

cWW-cWW-cWW-tWH-tSH-F-F

Number of instances in this motif group

11

Unit IDs

11HV|1|28|U|380
11HV|1|28|U|381
11HV|1|28|G|382
11HV|1|28|A|383
11HV|1|28|A|384
11HV|1|28|A|385
11HV|1|28|A|386
11HV|1|28|G|387
*
11HV|1|28|C|414
11HV|1|28|G|415
*
11HV|1|58|C|19
11HV|1|58|A|20

Current chains

Chain 28

28S rRNA

Chain 58

5.8S rRNA

Nearby chains

Chain 26

60S ribosomal protein L26

Chain 39

60S ribosomal protein L39

Chain L4

60S ribosomal protein L4