J3_11HV_006

3D structure

PDB id

11HV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 60S ribosomal subunit with eEF2 domain IV open

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CAGUC*GUGCG*CGAUG

Length

15 nucleotides

Bulged bases

11HV|1|28|C|704

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_11HV_006 not in the Motif Atlas

Homologous match to J3_8GLP_027

Geometric discrepancy: 0.3387

The information below is about J3_8GLP_027

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

11HV|1|28|C|451
11HV|1|28|A|452
11HV|1|28|G|453
11HV|1|28|U|454
11HV|1|28|C|455
*
11HV|1|28|G|701
11HV|1|28|U|702
11HV|1|28|G|703
11HV|1|28|C|704
11HV|1|28|G|705
*
11HV|1|28|C|1292
11HV|1|28|G|1293
11HV|1|28|A|1294
11HV|1|28|U|1295
11HV|1|28|G|1296

Current chains

Chain 28

28S rRNA

Nearby chains

Chain 32

Large ribosomal subunit protein eL32

Chain L6

Large ribosomal subunit protein eL6

Chain ee

Large ribosomal subunit protein eL33