J3_11HV_020

3D structure

PDB id

11HV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 60S ribosomal subunit with eEF2 domain IV open

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GUC*GCCUCACGAUCC*GGUGUC

Length

21 nucleotides

Bulged bases

11HV|1|28|C|4337, 11HV|1|28|U|4374

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_11HV_020 not in the Motif Atlas

Homologous match to J3_8GLP_034

Geometric discrepancy: 0.0434

The information below is about J3_8GLP_034

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_04772.3

Basepair signature

cWW-F-tHH-cWW-tHW-tHW-F-cWW-F-F-F-F-F

Number of instances in this motif group

9

Unit IDs

11HV|1|28|G|4228
11HV|1|28|U|4229
11HV|1|28|C|4230
*
11HV|1|28|G|4331
11HV|1|28|C|4332
11HV|1|28|C|4333
11HV|1|28|U|4334
11HV|1|28|C|4335
11HV|1|28|A|4336
11HV|1|28|C|4337
11HV|1|28|G|4338
11HV|1|28|A|4339
11HV|1|28|U|4340
11HV|1|28|C|4341
11HV|1|28|C|4342
*
11HV|1|28|G|4370
11HV|1|28|G|4371
11HV|1|28|U|4372
11HV|1|28|G|4373
11HV|1|28|U|4374
11HV|1|28|C|4375

Current chains

Chain 28

28S rRNA

Nearby chains

Chain 21

60S ribosomal protein L21

Chain 42

eL42

Chain Q

Large ribosomal subunit protein eL18

Chain dd

60S ribosomal protein L27a