J3_11HV_023
3D structure
- PDB id
- 11HV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit 60S ribosomal subunit with eEF2 domain IV open
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- CGGUUG*CCUUC*GCACCGCACGUUCGUG
- Length
- 27 nucleotides
- Bulged bases
- 11HV|1|28|U|4882, 11HV|1|28|A|4938, 11HV|1|28|C|4940, 11HV|1|28|A|4943, 11HV|1|28|C|4944, 11HV|1|28|U|4950
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
11HV|1|28|C|4749
11HV|1|28|G|4750
11HV|1|28|G|4751
11HV|1|28|U|4752
11HV|1|28|U|4753
11HV|1|28|G|4754
*
11HV|1|28|C|4879
11HV|1|28|C|4880
11HV|1|28|U|4881
11HV|1|28|U|4882
11HV|1|28|C|4883
*
11HV|1|28|G|4936
11HV|1|28|C|4937
11HV|1|28|A|4938
11HV|1|28|C|4939
11HV|1|28|C|4940
11HV|1|28|G|4941
11HV|1|28|C|4942
11HV|1|28|A|4943
11HV|1|28|C|4944
11HV|1|28|G|4945
11HV|1|28|U|4946
11HV|1|28|U|4947
11HV|1|28|C|4948
11HV|1|28|G|4949
11HV|1|28|U|4950
11HV|1|28|G|4951
Current chains
- Chain 28
- 28S rRNA
Nearby chains
- Chain 14
- 60S ribosomal protein L14
- Chain L6
- Large ribosomal subunit protein eL6
- Chain bb
- Large ribosomal subunit protein uL13
- Chain ee
- Large ribosomal subunit protein eL33
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