J3_11HV_024
3D structure
- PDB id
- 11HV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit 60S ribosomal subunit with eEF2 domain IV open
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- CAU*GCUUCU*AAGG
- Length
- 13 nucleotides
- Bulged bases
- 11HV|1|28|U|4989, 11HV|1|28|C|4990
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_11HV_024 not in the Motif Atlas
- Homologous match to J3_8GLP_037
- Geometric discrepancy: 0.4684
- The information below is about J3_8GLP_037
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
11HV|1|28|C|4970
11HV|1|28|A|4971
11HV|1|28|U|4972
*
11HV|1|28|G|4986
11HV|1|28|C|4987
11HV|1|28|U|4988
11HV|1|28|U|4989
11HV|1|28|C|4990
11HV|1|28|U|4991
*
11HV|1|28|A|5060
11HV|1|28|A|5061
11HV|1|28|G|5062
11HV|1|28|G|5063
Current chains
- Chain 28
- 28S rRNA
Nearby chains
- Chain 17
- 60S ribosomal protein L17
- Chain 31
- 60S ribosomal protein L31
- Chain L3
- 60S ribosomal protein L3
Coloring options: