J3_11IQ_001
3D structure
- PDB id
- 11IQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit 80S with eEF2,eIF5A and SERBP1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.4 Å
Loop
- Sequence
- AG*CGCAAAU*AGU
- Length
- 12 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_11IQ_001 not in the Motif Atlas
- Geometric match to J3_8GLP_040
- Geometric discrepancy: 0.0767
- The information below is about J3_8GLP_040
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_58657.3
- Basepair signature
- cWW-cWW-cSW-cWW-F-F-F-F
- Number of instances in this motif group
- 6
Unit IDs
11IQ|1|18|A|40
11IQ|1|18|G|41
*
11IQ|1|18|C|481
11IQ|1|18|G|482
11IQ|1|18|C|483
11IQ|1|18|A|484
11IQ|1|18|A|485
11IQ|1|18|A|486
11IQ|1|18|U|487
*
11IQ|1|18|A|512
11IQ|1|18|G|513
11IQ|1|18|U|514
Current chains
- Chain 18
- 18S rRNA
Nearby chains
- Chain RR
- 40S ribosomal protein S23
- Chain S9
- 40S ribosomal protein S9
- Chain v
- Elongation factor 2
Coloring options: