J3_11IQ_034
3D structure
- PDB id
- 11IQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit 80S with eEF2,eIF5A and SERBP1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.4 Å
Loop
- Sequence
- GGGG*CGCUUCUGGCGCCAAG*CGAC
- Length
- 24 nucleotides
- Bulged bases
- 11IQ|1|28|C|4116, 11IQ|1|28|U|4117, 11IQ|1|28|U|4118, 11IQ|1|28|C|4119, 11IQ|1|28|U|4120, 11IQ|1|28|G|4121
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_11IQ_034 not in the Motif Atlas
- Homologous match to J3_8GLP_008
- Geometric discrepancy: 0.1941
- The information below is about J3_8GLP_008
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
11IQ|1|28|G|4091
11IQ|1|28|G|4092
11IQ|1|28|G|4093
11IQ|1|28|G|4094
*
11IQ|1|28|C|4114
11IQ|1|28|G|4115
11IQ|1|28|C|4116
11IQ|1|28|U|4117
11IQ|1|28|U|4118
11IQ|1|28|C|4119
11IQ|1|28|U|4120
11IQ|1|28|G|4121
11IQ|1|28|G|4122
11IQ|1|28|C|4123
11IQ|1|28|G|4124
11IQ|1|28|C|4125
11IQ|1|28|C|4126
11IQ|1|28|A|4127
11IQ|1|28|A|4128
11IQ|1|28|G|4129
*
11IQ|1|28|C|4155
11IQ|1|28|G|4156
11IQ|1|28|A|4157
11IQ|1|28|C|4158
Current chains
- Chain 28
- 28S rRNA
Nearby chains
- Chain 27
- 60S ribosomal protein L27
- Chain 30
- Large ribosomal subunit protein eL30
- Chain 34
- 60S ribosomal protein L34
- Chain L8
- 60S ribosomal protein L8
- Chain aa
- Large ribosomal subunit protein eL8
- Chain ff
- 60S ribosomal protein L37a
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