J3_11IQ_035

3D structure

PDB id

11IQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S with eEF2,eIF5A and SERBP1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

GUC*GCCUCACGAUCC*GGUGUC

Length

21 nucleotides

Bulged bases

11IQ|1|28|U|4374

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_11IQ_035 not in the Motif Atlas

Homologous match to J3_8GLP_034

Geometric discrepancy: 0.0363

The information below is about J3_8GLP_034

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_04772.3

Basepair signature

cWW-F-tHH-cWW-tHW-tHW-F-cWW-F-F-F-F-F

Number of instances in this motif group

9

Unit IDs

11IQ|1|28|G|4228
11IQ|1|28|U|4229
11IQ|1|28|C|4230
*
11IQ|1|28|G|4331
11IQ|1|28|C|4332
11IQ|1|28|C|4333
11IQ|1|28|U|4334
11IQ|1|28|C|4335
11IQ|1|28|A|4336
11IQ|1|28|C|4337
11IQ|1|28|G|4338
11IQ|1|28|A|4339
11IQ|1|28|U|4340
11IQ|1|28|C|4341
11IQ|1|28|C|4342
*
11IQ|1|28|G|4370
11IQ|1|28|G|4371
11IQ|1|28|U|4372
11IQ|1|28|G|4373
11IQ|1|28|U|4374
11IQ|1|28|C|4375

Current chains

Chain 28

28S rRNA

Nearby chains

Chain 21

60S ribosomal protein L21

Chain 42

eL42

Chain B

Eukaryotic translation initiation factor 5A-1

Chain Q

Large ribosomal subunit protein eL18

Chain dd

60S ribosomal protein L27a