J3_11IQ_038

3D structure

PDB id

11IQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S with eEF2,eIF5A and SERBP1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

CGGUUG*CCUUC*GCACCGCACGUUCGUG

Length

27 nucleotides

Bulged bases

11IQ|1|28|U|4882, 11IQ|1|28|A|4938, 11IQ|1|28|C|4940, 11IQ|1|28|A|4943, 11IQ|1|28|C|4944, 11IQ|1|28|U|4950

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

11IQ|1|28|C|4749
11IQ|1|28|G|4750
11IQ|1|28|G|4751
11IQ|1|28|U|4752
11IQ|1|28|U|4753
11IQ|1|28|G|4754
*
11IQ|1|28|C|4879
11IQ|1|28|C|4880
11IQ|1|28|U|4881
11IQ|1|28|U|4882
11IQ|1|28|C|4883
*
11IQ|1|28|G|4936
11IQ|1|28|C|4937
11IQ|1|28|A|4938
11IQ|1|28|C|4939
11IQ|1|28|C|4940
11IQ|1|28|G|4941
11IQ|1|28|C|4942
11IQ|1|28|A|4943
11IQ|1|28|C|4944
11IQ|1|28|G|4945
11IQ|1|28|U|4946
11IQ|1|28|U|4947
11IQ|1|28|C|4948
11IQ|1|28|G|4949
11IQ|1|28|U|4950
11IQ|1|28|G|4951

Current chains

Chain 28

28S rRNA

Nearby chains

Chain 14

60S ribosomal protein L14

Chain L6

60S ribosomal protein L6

Chain bb

Large ribosomal subunit protein uL13

Chain ee

Large ribosomal subunit protein eL33