J3_11JJ_001

3D structure

PDB id

11JJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S with eEF2,IFRD2 and LARP1,40S-head-swiveled

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

AG*CGCAAAU*AGU

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_11JJ_001 not in the Motif Atlas

Homologous match to J3_9H3G_028

Geometric discrepancy: 0.1404

The information below is about J3_9H3G_028

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_58657.3

Basepair signature

cWW-cWW-cSW-cWW-F-F-F-F

Number of instances in this motif group

6

Unit IDs

11JJ|1|18|A|40
11JJ|1|18|G|41
*
11JJ|1|18|C|481
11JJ|1|18|G|482
11JJ|1|18|C|483
11JJ|1|18|A|484
11JJ|1|18|A|485
11JJ|1|18|A|486
11JJ|1|18|U|487
*
11JJ|1|18|A|512
11JJ|1|18|G|513
11JJ|1|18|U|514

Current chains

Chain 18

18S rRNA

Nearby chains

Chain RR

40S ribosomal protein S23

Chain S9

40S ribosomal protein S9

Chain v

Elongation factor 2