J3_11JJ_008
3D structure
- PDB id
- 11JJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit 80S with eEF2,IFRD2 and LARP1,40S-head-swiveled
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- UGGA*UAC*GGAA
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_11JJ_008 not in the Motif Atlas
- Homologous match to J3_9H3G_036
- Geometric discrepancy: 0.138
- The information below is about J3_9H3G_036
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_44359.3
- Basepair signature
- cWW-tSH-cWW-F-cWW-cWW
- Number of instances in this motif group
- 6
Unit IDs
11JJ|1|18|U|1225
11JJ|1|18|G|1226
11JJ|1|18|G|1227
11JJ|1|18|A|1228
*
11JJ|1|18|U|1530
11JJ|1|18|A|1531
11JJ|1|18|C|1532
*
11JJ|1|18|G|1638
11JJ|1|18|G|1639
11JJ|1|18|A|1640
11JJ|1|18|A|1641
Current chains
- Chain 18
- 18S rRNA
Nearby chains
- Chain II
- Small ribosomal subunit protein uS9
- Chain LL
- 40S ribosomal protein S18
- Chain MM
- Small ribosomal subunit protein eS19
- Chain S5
- Small ribosomal subunit protein uS7
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