J3_11JJ_009
3D structure
- PDB id
- 11JJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit 80S with eEF2,IFRD2 and LARP1,40S-head-swiveled
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- CUUAAUUU*GGGAAACCUCAC*GGCUG
- Length
- 25 nucleotides
- Bulged bases
- 11JJ|1|18|G|1256, 11JJ|1|18|A|1258, 11JJ|1|18|A|1260
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_11JJ_009 not in the Motif Atlas
- Homologous match to J3_9PN5_037
- Geometric discrepancy: 0.104
- The information below is about J3_9PN5_037
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_88451.3
- Basepair signature
- cWW-tWW-F-F-F-F-F-tSS-cWW-F-F-cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 6
Unit IDs
11JJ|1|18|C|1237
11JJ|1|18|U|1238
11JJ|1|18|U|1239
11JJ|1|18|A|1240
11JJ|1|18|A|1241
11JJ|1|18|U|1242
11JJ|1|18|U|1243
11JJ|1|18|U|1244
*
11JJ|1|18|G|1255
11JJ|1|18|G|1256
11JJ|1|18|G|1257
11JJ|1|18|A|1258
11JJ|1|18|A|1259
11JJ|1|18|A|1260
11JJ|1|18|C|1261
11JJ|1|18|C|1262
11JJ|1|18|U|1263
11JJ|1|18|C|1264
11JJ|1|18|A|1265
11JJ|1|18|C|1266
*
11JJ|1|18|G|1516
11JJ|1|18|G|1517
11JJ|1|18|C|1518
11JJ|1|18|U|1519
11JJ|1|18|G|1520
Current chains
- Chain 18
- 18S rRNA
Nearby chains
- Chain A
- Small ribosomal subunit protein uS19
- Chain LL
- 40S ribosomal protein S18
- Chain OO
- 40S ribosomal protein S20
- Chain XX
- 40S ribosomal protein S29
- Chain ZZ
- 40S ribosomal protein S27a
Coloring options: