J3_11JJ_010
3D structure
- PDB id
- 11JJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit 80S with eEF2,IFRD2 and LARP1,40S-head-swiveled
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- CCGGAC*GGGUG*UUAGAUG
- Length
- 18 nucleotides
- Bulged bases
- 11JJ|1|18|G|1274, 11JJ|1|18|G|1507, 11JJ|1|18|U|1509
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_11JJ_010 not in the Motif Atlas
- Homologous match to J3_9H3G_038
- Geometric discrepancy: 0.1372
- The information below is about J3_9H3G_038
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_87797.4
- Basepair signature
- cWW-tWH-F-F-tHS-cWW-cWW-cWW-F
- Number of instances in this motif group
- 4
Unit IDs
11JJ|1|18|C|1272
11JJ|1|18|C|1273
11JJ|1|18|G|1274
11JJ|1|18|G|1275
11JJ|1|18|A|1276
11JJ|1|18|C|1277
*
11JJ|1|18|G|1320
11JJ|1|18|G|1321
11JJ|1|18|G|1322
11JJ|1|18|U|1323
11JJ|1|18|G|1324
*
11JJ|1|18|U|1504
11JJ|1|18|U|1505
11JJ|1|18|A|1506
11JJ|1|18|G|1507
11JJ|1|18|A|1508
11JJ|1|18|U|1509
11JJ|1|18|G|1510
Current chains
- Chain 18
- 18S rRNA
Nearby chains
- Chain CC
- 40S ribosomal protein S10
- Chain XX
- 40S ribosomal protein S29
- Chain ZZ
- 40S ribosomal protein S27a
- Chain v
- Elongation factor 2
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