J3_11JJ_014

3D structure

PDB id

11JJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S with eEF2,IFRD2 and LARP1,40S-head-swiveled

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CACUG*CGUGAUGG*CGAG

Length

17 nucleotides

Bulged bases

11JJ|1|18|U|1535, 11JJ|1|18|G|1603

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_11JJ_014 not in the Motif Atlas

Homologous match to J3_9H3G_043

Geometric discrepancy: 0.2483

The information below is about J3_9H3G_043

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_03192.4

Basepair signature

cWW-cSS-tHW-F-F-F-cWW-cWW-cSH-cSH-F

Number of instances in this motif group

7

Unit IDs

11JJ|1|18|C|1532
11JJ|1|18|A|1533
11JJ|1|18|C|1534
11JJ|1|18|U|1535
11JJ|1|18|G|1536
*
11JJ|1|18|C|1597
11JJ|1|18|G|1598
11JJ|1|18|U|1599
11JJ|1|18|G|1600
11JJ|1|18|A|1601
11JJ|1|18|U|1602
11JJ|1|18|G|1603
11JJ|1|18|G|1604
*
11JJ|1|18|C|1635
11JJ|1|18|G|1636
11JJ|1|18|A|1637
11JJ|1|18|G|1638

Current chains

Chain 18

18S rRNA

Nearby chains

Chain LL

40S ribosomal protein S18

Chain MM

Small ribosomal subunit protein eS19

Chain S5

Small ribosomal subunit protein uS7

Chain TT

40S ribosomal protein S25