J3_11JJ_018
3D structure
- PDB id
- 11JJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit 80S with eEF2,IFRD2 and LARP1,40S-head-swiveled
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- UUGAAAAGAAC*GAGUUCAAGAGGGCG*CA
- Length
- 28 nucleotides
- Bulged bases
- 11JJ|1|28|G|409, 11JJ|1|28|G|413
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_11JJ_018 not in the Motif Atlas
- Homologous match to J3_8GLP_026
- Geometric discrepancy: 0.0685
- The information below is about J3_8GLP_026
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_17917.4
- Basepair signature
- cWW-tWH-cSS-cWW-tSH-tHH-cWW-F-F-tWW-tSS-cSS-tWW-tSH-tWH-cSW-F-tHS-cWW-F
- Number of instances in this motif group
- 11
Unit IDs
11JJ|1|28|U|380
11JJ|1|28|U|381
11JJ|1|28|G|382
11JJ|1|28|A|383
11JJ|1|28|A|384
11JJ|1|28|A|385
11JJ|1|28|A|386
11JJ|1|28|G|387
11JJ|1|28|A|388
11JJ|1|28|A|389
11JJ|1|28|C|390
*
11JJ|1|28|G|401
11JJ|1|28|A|402
11JJ|1|28|G|403
11JJ|1|28|U|404
11JJ|1|28|U|405
11JJ|1|28|C|406
11JJ|1|28|A|407
11JJ|1|28|A|408
11JJ|1|28|G|409
11JJ|1|28|A|410
11JJ|1|28|G|411
11JJ|1|28|G|412
11JJ|1|28|G|413
11JJ|1|28|C|414
11JJ|1|28|G|415
*
11JJ|1|58|C|19
11JJ|1|58|A|20
Current chains
- Chain 28
- 28S rRNA
- Chain 58
- 5.8S rRNA
Nearby chains
- Chain 17
- 60S ribosomal protein L17
- Chain 26
- 60S ribosomal protein L26
- Chain 39
- 60S ribosomal protein L39
- Chain F
- Proliferation-associated protein 2G4
- Chain L4
- 60S ribosomal protein L4
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