J3_11JJ_019
3D structure
- PDB id
- 11JJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit 80S with eEF2,IFRD2 and LARP1,40S-head-swiveled
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- CAGUC*GUGCG*CGAUG
- Length
- 15 nucleotides
- Bulged bases
- 11JJ|1|28|C|704, 11JJ|1|28|U|1295
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_11JJ_019 not in the Motif Atlas
- Homologous match to J3_8GLP_027
- Geometric discrepancy: 0.2921
- The information below is about J3_8GLP_027
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
11JJ|1|28|C|451
11JJ|1|28|A|452
11JJ|1|28|G|453
11JJ|1|28|U|454
11JJ|1|28|C|455
*
11JJ|1|28|G|701
11JJ|1|28|U|702
11JJ|1|28|G|703
11JJ|1|28|C|704
11JJ|1|28|G|705
*
11JJ|1|28|C|1292
11JJ|1|28|G|1293
11JJ|1|28|A|1294
11JJ|1|28|U|1295
11JJ|1|28|G|1296
Current chains
- Chain 28
- 28S rRNA
Nearby chains
- Chain 32
- Large ribosomal subunit protein eL32
- Chain L6
- 60S ribosomal protein L6
- Chain ee
- Large ribosomal subunit protein eL33
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