J3_11JJ_022

3D structure

PDB id

11JJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S with eEF2,IFRD2 and LARP1,40S-head-swiveled

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UU*AGAAG*CGUGGA

Length

13 nucleotides

Bulged bases

11JJ|1|28|A|1805, 11JJ|1|28|U|1834

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_11JJ_022 not in the Motif Atlas

Homologous match to J3_8GLP_029

Geometric discrepancy: 0.174

The information below is about J3_8GLP_029

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_84137.2

Basepair signature

cWW-cWW-cHW-F-cSS-F-cWW

Number of instances in this motif group

5

Unit IDs

11JJ|1|28|U|1726
11JJ|1|28|U|1727
*
11JJ|1|28|A|1802
11JJ|1|28|G|1803
11JJ|1|28|A|1804
11JJ|1|28|A|1805
11JJ|1|28|G|1806
*
11JJ|1|28|C|1832
11JJ|1|28|G|1833
11JJ|1|28|U|1834
11JJ|1|28|G|1835
11JJ|1|28|G|1836
11JJ|1|28|A|1837

Current chains

Chain 28

28S rRNA

Nearby chains

Chain 21

60S ribosomal protein L21

Chain 29

Large ribosomal subunit protein eL29

Chain L7

60S ribosomal protein L7