J3_11JJ_026
3D structure
- PDB id
- 11JJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit 80S with eEF2,IFRD2 and LARP1,40S-head-swiveled
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- UCGGUC*GGAGU*AA
- Length
- 13 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_11JJ_026 not in the Motif Atlas
- Homologous match to J3_8GLP_030
- Geometric discrepancy: 0.0692
- The information below is about J3_8GLP_030
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_94309.4
- Basepair signature
- cWW-F-cWW-F-F-F-F-F-cWW-F
- Number of instances in this motif group
- 11
Unit IDs
11JJ|1|28|U|2440
11JJ|1|28|C|2441
11JJ|1|28|G|2442
11JJ|1|28|G|2443
11JJ|1|28|U|2444
11JJ|1|28|C|2445
*
11JJ|1|28|G|2515
11JJ|1|28|G|2516
11JJ|1|28|A|2517
11JJ|1|28|G|2518
11JJ|1|28|U|2519
*
11JJ|1|28|A|2536
11JJ|1|28|A|2537
Current chains
- Chain 28
- 28S rRNA
Nearby chains
- Chain 34
- 60S ribosomal protein L34
- Chain 38
- Large ribosomal subunit protein eL38
- Chain 39
- 60S ribosomal protein L39
- Chain 58
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain cc
- Large ribosomal subunit protein uL23
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