J3_11JJ_029

3D structure

PDB id

11JJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S with eEF2,IFRD2 and LARP1,40S-head-swiveled

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UG*CGACC*GA

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_11JJ_029 not in the Motif Atlas

Homologous match to J3_8GLP_032

Geometric discrepancy: 0.1174

The information below is about J3_8GLP_032

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_05348.3

Basepair signature

cWW-cWW-cWW-F-F-F

Number of instances in this motif group

6

Unit IDs

11JJ|1|28|U|2575
11JJ|1|28|G|2576
*
11JJ|1|28|C|2585
11JJ|1|28|G|2586
11JJ|1|28|A|2587
11JJ|1|28|C|2588
11JJ|1|28|C|2589
*
11JJ|1|28|G|2756
11JJ|1|28|A|2757

Current chains

Chain 28

28S rRNA

Nearby chains

Chain 27

60S ribosomal protein L27

Chain 34

60S ribosomal protein L34