J3_11JJ_032

3D structure

PDB id

11JJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S with eEF2,IFRD2 and LARP1,40S-head-swiveled

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GGGG*CGCUUCUGGCGCCAAG*CGAC

Length

24 nucleotides

Bulged bases

11JJ|1|28|C|4116, 11JJ|1|28|U|4117, 11JJ|1|28|U|4118, 11JJ|1|28|C|4119, 11JJ|1|28|U|4120, 11JJ|1|28|G|4121

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_11JJ_032 not in the Motif Atlas

Homologous match to J3_8GLP_008

Geometric discrepancy: 0.2022

The information below is about J3_8GLP_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

11JJ|1|28|G|4091
11JJ|1|28|G|4092
11JJ|1|28|G|4093
11JJ|1|28|G|4094
*
11JJ|1|28|C|4114
11JJ|1|28|G|4115
11JJ|1|28|C|4116
11JJ|1|28|U|4117
11JJ|1|28|U|4118
11JJ|1|28|C|4119
11JJ|1|28|U|4120
11JJ|1|28|G|4121
11JJ|1|28|G|4122
11JJ|1|28|C|4123
11JJ|1|28|G|4124
11JJ|1|28|C|4125
11JJ|1|28|C|4126
11JJ|1|28|A|4127
11JJ|1|28|A|4128
11JJ|1|28|G|4129
*
11JJ|1|28|C|4155
11JJ|1|28|G|4156
11JJ|1|28|A|4157
11JJ|1|28|C|4158

Current chains

Chain 28

28S rRNA

Nearby chains

Chain 27

60S ribosomal protein L27

Chain 30

60S ribosomal protein L30

Chain 34

60S ribosomal protein L34

Chain L8

60S ribosomal protein L8

Chain aa

Large ribosomal subunit protein eL8

Chain cc

Large ribosomal subunit protein uL23

Chain ff

60S ribosomal protein L37a