J3_11JJ_033
3D structure
- PDB id
- 11JJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit 80S with eEF2,IFRD2 and LARP1,40S-head-swiveled
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- GUC*GCCUCACGAUCC*GGUGUC
- Length
- 21 nucleotides
- Bulged bases
- 11JJ|1|28|C|4337, 11JJ|1|28|U|4374
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_11JJ_033 not in the Motif Atlas
- Homologous match to J3_8GLP_034
- Geometric discrepancy: 0.0473
- The information below is about J3_8GLP_034
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_04772.3
- Basepair signature
- cWW-F-tHH-cWW-tHW-tHW-F-cWW-F-F-F-F-F
- Number of instances in this motif group
- 9
Unit IDs
11JJ|1|28|G|4228
11JJ|1|28|U|4229
11JJ|1|28|C|4230
*
11JJ|1|28|G|4331
11JJ|1|28|C|4332
11JJ|1|28|C|4333
11JJ|1|28|U|4334
11JJ|1|28|C|4335
11JJ|1|28|A|4336
11JJ|1|28|C|4337
11JJ|1|28|G|4338
11JJ|1|28|A|4339
11JJ|1|28|U|4340
11JJ|1|28|C|4341
11JJ|1|28|C|4342
*
11JJ|1|28|G|4370
11JJ|1|28|G|4371
11JJ|1|28|U|4372
11JJ|1|28|G|4373
11JJ|1|28|U|4374
11JJ|1|28|C|4375
Current chains
- Chain 28
- 28S rRNA
Nearby chains
- Chain 21
- 60S ribosomal protein L21
- Chain 42
- eL42
- Chain IF
- IFRD2
- Chain Q
- Large ribosomal subunit protein eL18
- Chain dd
- 60S ribosomal protein L27a
Coloring options: