J3_11JJ_035

3D structure

PDB id

11JJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S with eEF2,IFRD2 and LARP1,40S-head-swiveled

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UAUC*GUU*ACUAAUA

Length

14 nucleotides

Bulged bases

11JJ|1|28|A|4464, 11JJ|1|28|U|4465

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_11JJ_035 not in the Motif Atlas

Homologous match to J3_9PN5_022

Geometric discrepancy: 0.0751

The information below is about J3_9PN5_022

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_44047.3

Basepair signature

cWW-cWH-cWW-cSS-tWW-tSS-F-cWW-F

Number of instances in this motif group

5

Unit IDs

11JJ|1|28|U|4463
11JJ|1|28|A|4464
11JJ|1|28|U|4465
11JJ|1|28|C|4466
*
11JJ|1|28|G|4491
11JJ|1|28|U|4492
11JJ|1|28|U|4493
*
11JJ|1|28|A|4507
11JJ|1|28|C|4508
11JJ|1|28|U|4509
11JJ|1|28|A|4510
11JJ|1|28|A|4511
11JJ|1|28|U|4512
11JJ|1|28|A|4513

Current chains

Chain 28

28S rRNA

Nearby chains

Chain 23

Large ribosomal subunit protein uL14

Chain L3

60S ribosomal protein L3

Chain bb

Large ribosomal subunit protein uL13