J3_11JJ_038
3D structure
- PDB id
- 11JJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit 80S with eEF2,IFRD2 and LARP1,40S-head-swiveled
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- AC*GAGAAUU*ACACU
- Length
- 14 nucleotides
- Bulged bases
- 11JJ|1|58|A|62
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_11JJ_038 not in the Motif Atlas
- Homologous match to J3_8GLP_039
- Geometric discrepancy: 0.0607
- The information below is about J3_8GLP_039
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_01004.4
- Basepair signature
- cWW-cWW-F-F-F-cWW-F-cWW
- Number of instances in this motif group
- 12
Unit IDs
11JJ|1|58|A|44
11JJ|1|58|C|45
*
11JJ|1|58|G|58
11JJ|1|58|A|59
11JJ|1|58|G|60
11JJ|1|58|A|61
11JJ|1|58|A|62
11JJ|1|58|U|63
11JJ|1|58|U|64
*
11JJ|1|58|A|95
11JJ|1|58|C|96
11JJ|1|58|A|97
11JJ|1|58|C|98
11JJ|1|58|U|99
Current chains
- Chain 58
- 5.8S rRNA
Nearby chains
- Chain 28
- Large subunit ribosomal RNA; LSU rRNA
- Chain 35
- 60S ribosomal protein L35
- Chain 37
- 60S ribosomal protein L37
- Chain 39
- 60S ribosomal protein L39
- Chain cc
- Large ribosomal subunit protein uL23
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