J3_11KH_001
3D structure
- PDB id
- 11KH (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit 80S with IFRD2 and LARP1, 40S head-swiveled
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- AGAUUAAG*CGCGCAAAU*AGU
- Length
- 20 nucleotides
- Bulged bases
- 11KH|1|18|A|45, 11KH|1|18|A|46
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_11KH_001 not in the Motif Atlas
- Homologous match to J3_9PN5_028
- Geometric discrepancy: 0.0917
- The information below is about J3_9PN5_028
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_63856.3
- Basepair signature
- cWW-cWW-cSW-F-cWW-F-cWS-tHH-F-cWW-F-F-F
- Number of instances in this motif group
- 6
Unit IDs
11KH|1|18|A|40
11KH|1|18|G|41
11KH|1|18|A|42
11KH|1|18|U|43
11KH|1|18|U|44
11KH|1|18|A|45
11KH|1|18|A|46
11KH|1|18|G|47
*
11KH|1|18|C|479
11KH|1|18|G|480
11KH|1|18|C|481
11KH|1|18|G|482
11KH|1|18|C|483
11KH|1|18|A|484
11KH|1|18|A|485
11KH|1|18|A|486
11KH|1|18|U|487
*
11KH|1|18|A|512
11KH|1|18|G|513
11KH|1|18|U|514
Current chains
- Chain 18
- 18S rRNA
Nearby chains
- Chain RR
- 40S ribosomal protein S23
- Chain S9
- 40S ribosomal protein S9
Coloring options: