J3_9PN5_028

3D structure

PDB id

9PN5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Composite map of hypomethylated 80S ribosome treated with hygromycin B

Experimental method

ELECTRON MICROSCOPY

Resolution

1.75 Å

Loop

Sequence

AGAUUAAG*CGCGCAAAU*AG(PSU)

Length

20 nucleotides

Bulged bases

9PN5|1|B5|A|47

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_63856.3

Basepair signature

cWW-cWW-cSW-F-cWW-F-cWS-tHH-F-cWW-F-F-F

Number of instances in this motif group

6

Unit IDs

9PN5|1|B5|A|41
9PN5|1|B5|G|42
9PN5|1|B5|A|43
9PN5|1|B5|U|44
9PN5|1|B5|U|45
9PN5|1|B5|A|46
9PN5|1|B5|A|47
9PN5|1|B5|G|48
*
9PN5|1|B5|C|431
9PN5|1|B5|G|432
9PN5|1|B5|C|433
9PN5|1|B5|G|434
9PN5|1|B5|C|435
9PN5|1|B5|A|436
9PN5|1|B5|A|437
9PN5|1|B5|A|438
9PN5|1|B5|U|439
*
9PN5|1|B5|A|464
9PN5|1|B5|G|465
9PN5|1|B5|PSU|466

Current chains

Chain B5

18S rRNA

Nearby chains

Chain BJ

Small ribosomal subunit protein uS4A

Chain BX

Small ribosomal subunit protein uS12A