J3_11KH_005
3D structure
- PDB id
- 11KH (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit 80S with IFRD2 and LARP1, 40S head-swiveled
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- CCAG*CCAGUAA*UGAUUAAG
- Length
- 19 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_11KH_005 not in the Motif Atlas
- Homologous match to J3_9H3G_035
- Geometric discrepancy: 0.1547
- The information below is about J3_9H3G_035
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_85722.3
- Basepair signature
- cWW-F-F-cSS-F-cWW-tWW-F-tWH-F-tHS-cSH-cWW
- Number of instances in this motif group
- 6
Unit IDs
11KH|1|18|C|1218
11KH|1|18|C|1219
11KH|1|18|A|1220
11KH|1|18|G|1221
*
11KH|1|18|C|1645
11KH|1|18|C|1646
11KH|1|18|A|1647
11KH|1|18|G|1648
11KH|1|18|U|1649
11KH|1|18|A|1650
11KH|1|18|A|1651
*
11KH|1|18|U|1673
11KH|1|18|G|1674
11KH|1|18|A|1675
11KH|1|18|U|1676
11KH|1|18|U|1677
11KH|1|18|A|1678
11KH|1|18|A|1679
11KH|1|18|G|1680
Current chains
- Chain 18
- 18S rRNA
Nearby chains
- Chain II
- Small ribosomal subunit protein uS9
- Chain S5
- Small ribosomal subunit protein uS7
- Chain WW
- 40S ribosomal protein S28
Coloring options: