J3_9H3G_035

3D structure

PDB id

9H3G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Arabidopsis thaliana 80S ribosome in complex with P- and E-site tRNAs and mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

1.82 Å

Loop

Sequence

CCAG*CUAGUAA*(PSU)GACUACG

Length

19 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9H3G|1|h1|C|1162
9H3G|1|h1|C|1163
9H3G|1|h1|A|1164
9H3G|1|h1|G|1165
*
9H3G|1|h1|C|1583
9H3G|1|h1|U|1584
9H3G|1|h1|A|1585
9H3G|1|h1|G|1586
9H3G|1|h1|U|1587
9H3G|1|h1|A|1588
9H3G|1|h1|A|1589
*
9H3G|1|h1|PSU|1611
9H3G|1|h1|G|1612
9H3G|1|h1|A|1613
9H3G|1|h1|C|1614
9H3G|1|h1|U|1615
9H3G|1|h1|A|1616
9H3G|1|h1|C|1617
9H3G|1|h1|G|1618

Current chains

Chain h1

Ribosomal RNA 18S

Nearby chains

Chain AD

Small ribosomal subunit protein uS7y

Chain AF

Small ribosomal subunit protein uS9z

Chain Oa

Small ribosomal subunit protein eS28x