J3_11KH_009
3D structure
- PDB id
- 11KH (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit 80S with IFRD2 and LARP1, 40S head-swiveled
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- UCUUAG*CGAGAC*GCAAUA
- Length
- 18 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_11KH_009 not in the Motif Atlas
- Homologous match to J3_9PN5_039
- Geometric discrepancy: 0.164
- The information below is about J3_9PN5_039
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
11KH|1|18|U|1340
11KH|1|18|C|1341
11KH|1|18|U|1342
11KH|1|18|U|1343
11KH|1|18|A|1344
11KH|1|18|G|1345
*
11KH|1|18|C|1384
11KH|1|18|G|1385
11KH|1|18|A|1386
11KH|1|18|G|1387
11KH|1|18|A|1388
11KH|1|18|C|1389
*
11KH|1|18|G|1481
11KH|1|18|C|1482
11KH|1|18|A|1483
11KH|1|18|A|1484
11KH|1|18|U|1485
11KH|1|18|A|1486
Current chains
- Chain 18
- 18S rRNA
Nearby chains
- Chain II
- Small ribosomal subunit protein uS9
- Chain OO
- 40S ribosomal protein S20
- Chain RS
- 40S ribosomal protein S17
- Chain S2
- 40S ribosomal protein S2
- Chain S3
- Small ribosomal subunit protein uS3
- Chain XX
- 40S ribosomal protein S29
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