J3_11KH_012

3D structure

PDB id

11KH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S with IFRD2 and LARP1, 40S head-swiveled

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CACUG*CGUGAUGG*CGAG

Length

17 nucleotides

Bulged bases

11KH|1|18|U|1535, 11KH|1|18|G|1603

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_11KH_012 not in the Motif Atlas

Homologous match to J3_9PN5_043

Geometric discrepancy: 0.2394

The information below is about J3_9PN5_043

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_03192.4

Basepair signature

cWW-cSS-tHW-F-F-F-cWW-cWW-cSH-cSH-F

Number of instances in this motif group

7

Unit IDs

11KH|1|18|C|1532
11KH|1|18|A|1533
11KH|1|18|C|1534
11KH|1|18|U|1535
11KH|1|18|G|1536
*
11KH|1|18|C|1597
11KH|1|18|G|1598
11KH|1|18|U|1599
11KH|1|18|G|1600
11KH|1|18|A|1601
11KH|1|18|U|1602
11KH|1|18|G|1603
11KH|1|18|G|1604
*
11KH|1|18|C|1635
11KH|1|18|G|1636
11KH|1|18|A|1637
11KH|1|18|G|1638

Current chains

Chain 18

18S rRNA

Nearby chains

Chain LL

40S ribosomal protein S18

Chain MM

Small ribosomal subunit protein eS19

Chain S5

Small ribosomal subunit protein uS7

Chain TT

40S ribosomal protein S25