J3_11KH_013
3D structure
- PDB id
- 11KH (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit 80S with IFRD2 and LARP1, 40S head-swiveled
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- CAGCG*CGUACG*CCGG
- Length
- 15 nucleotides
- Bulged bases
- 11KH|1|28|C|159
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_11KH_013 not in the Motif Atlas
- Homologous match to J3_8GLP_001
- Geometric discrepancy: 0.0861
- The information below is about J3_8GLP_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
11KH|1|28|C|112
11KH|1|28|A|113
11KH|1|28|G|114
11KH|1|28|C|115
11KH|1|28|G|116
*
11KH|1|28|C|155
11KH|1|28|G|156
11KH|1|28|U|157
11KH|1|28|A|158
11KH|1|28|C|159
11KH|1|28|G|160
*
11KH|1|28|C|275
11KH|1|28|C|276
11KH|1|28|G|277
11KH|1|28|G|278
Current chains
- Chain 28
- 28S rRNA
Nearby chains
- Chain 13
- Large ribosomal subunit protein eL13
- Chain 15
- 60S ribosomal protein L15
- Chain 35
- 60S ribosomal protein L35
- Chain 36
- 60S ribosomal protein L36
- Chain aa
- Large ribosomal subunit protein eL8
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