J3_11KH_014
3D structure
- PDB id
- 11KH (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit 80S with IFRD2 and LARP1, 40S head-swiveled
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- CGAUAGUCAACAAGUAC*GGAAAG*CUCG
- Length
- 27 nucleotides
- Bulged bases
- 11KH|1|28|U|354, 11KH|1|28|A|362, 11KH|1|58|C|23
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_11KH_014 not in the Motif Atlas
- Homologous match to J3_8GLP_024
- Geometric discrepancy: 0.0485
- The information below is about J3_8GLP_024
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_07616.3
- Basepair signature
- cWW-cSS-tSS-tSW-tHW-cWW-tWH-F-F-tHH-tSS-tWH-F-tHS-cWW-F-cSH
- Number of instances in this motif group
- 11
Unit IDs
11KH|1|28|C|351
11KH|1|28|G|352
11KH|1|28|A|353
11KH|1|28|U|354
11KH|1|28|A|355
11KH|1|28|G|356
11KH|1|28|U|357
11KH|1|28|C|358
11KH|1|28|A|359
11KH|1|28|A|360
11KH|1|28|C|361
11KH|1|28|A|362
11KH|1|28|A|363
11KH|1|28|G|364
11KH|1|28|U|365
11KH|1|28|A|366
11KH|1|28|C|367
*
11KH|1|28|G|374
11KH|1|28|G|375
11KH|1|28|A|376
11KH|1|28|A|377
11KH|1|28|A|378
11KH|1|28|G|379
*
11KH|1|58|C|21
11KH|1|58|U|22
11KH|1|58|C|23
11KH|1|58|G|24
Current chains
- Chain 28
- 28S rRNA
- Chain 58
- 5.8S rRNA
Nearby chains
- Chain 26
- 60S ribosomal protein L26
- Chain 37
- 60S ribosomal protein L37
- Chain 39
- 60S ribosomal protein L39
- Chain L4
- 60S ribosomal protein L4
Coloring options: