3D structure

PDB id
8GLP (explore in PDB, NAKB, or RNA 3D Hub)
Description
mRNA decoding in human is kinetically and structurally distinct from bacteria (Consensus LSU focused refined structure)
Experimental method
ELECTRON MICROSCOPY
Resolution
1.67 Å

Loop

Sequence
CGAUAGUCAACAAGUAC*GGAAAG*CUCG
Length
27 nucleotides
Bulged bases
8GLP|1|L5|U|354, 8GLP|1|L5|A|362, 8GLP|1|L8|C|23
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_8GLP_024 not in the Motif Atlas
Homologous match to J3_8P9A_045
Geometric discrepancy: 0.0426
The information below is about J3_8P9A_045
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_30040.2
Basepair signature
cWW-tWH-F-cWW-tSS-tHH-cSS-tWH-tSW-tHS-cWW-tWH-F-cSH-tSS-F-F
Number of instances in this motif group
7

Unit IDs

8GLP|1|L5|C|351
8GLP|1|L5|G|352
8GLP|1|L5|A|353
8GLP|1|L5|U|354
8GLP|1|L5|A|355
8GLP|1|L5|G|356
8GLP|1|L5|U|357
8GLP|1|L5|C|358
8GLP|1|L5|A|359
8GLP|1|L5|A|360
8GLP|1|L5|C|361
8GLP|1|L5|A|362
8GLP|1|L5|A|363
8GLP|1|L5|G|364
8GLP|1|L5|U|365
8GLP|1|L5|A|366
8GLP|1|L5|C|367
*
8GLP|1|L5|G|374
8GLP|1|L5|G|375
8GLP|1|L5|A|376
8GLP|1|L5|A|377
8GLP|1|L5|A|378
8GLP|1|L5|G|379
*
8GLP|1|L8|C|21
8GLP|1|L8|U|22
8GLP|1|L8|C|23
8GLP|1|L8|G|24

Current chains

Chain L5
28S rRNA
Chain L8
5.8S rRNA

Nearby chains

Chain LC
60S ribosomal protein L4
Chain LY
60S ribosomal protein L26
Chain Lj
60S ribosomal protein L37
Chain Ll
60S ribosomal protein L39

Coloring options:


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