J3_11KH_015

3D structure

PDB id

11KH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S with IFRD2 and LARP1, 40S head-swiveled

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UUGAAAAG*CG*CA

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_11KH_015 not in the Motif Atlas

Geometric match to J3_8GLP_025

Geometric discrepancy: 0.0618

The information below is about J3_8GLP_025

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_68715.4

Basepair signature

cWW-tWH-cWW-tSH-F-cWW-F

Number of instances in this motif group

12

Unit IDs

11KH|1|28|U|380
11KH|1|28|U|381
11KH|1|28|G|382
11KH|1|28|A|383
11KH|1|28|A|384
11KH|1|28|A|385
11KH|1|28|A|386
11KH|1|28|G|387
*
11KH|1|28|C|414
11KH|1|28|G|415
*
11KH|1|58|C|19
11KH|1|58|A|20

Current chains

Chain 28

28S rRNA

Chain 58

5.8S rRNA

Nearby chains

Chain 26

60S ribosomal protein L26

Chain 39

60S ribosomal protein L39

Chain L4

60S ribosomal protein L4