Motif J3_68715.4 Version J3_68715.4 of this group appears in releases 4.14 to 4.14

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Pairwise interactions
Sequence variants
History

#S	Loop id	PDB	Disc	#Non-core	Chain(s)	Standardized name for chain		1		2		3		4		5		6		7		8	break		9		10	break		11		12	1-12	2-6	3-7	8-9	10-11
1	J3_9DFE_001	9DFE	0.1088	0	1A	LSU rRNA	G	474	U	475	G	476	A	477	A	478	A	479	A	480	G	481	*	C	509	C	510	*	G	30	C	31	cWW	tWH	tSH	cWW	cWW
2	J3_8B0X_014	8B0X	0.0772	0	a	LSU rRNA	G	474	C	475	G	476	A	477	A	478	A	479	A	480	G	481	*	C	509	C	510	*	G	30	C	31	cWW	ntWH	tSH	cWW	cWW
3	J3_4WF9_010	4WF9	0.0819	0	X	LSU rRNA	G	520	U	521	G	522	A	523	A	524	A	525	A	526	G	527	*	C	554	C	555	*	G	30	C	31	cWW	tWH	ntSH	cWW	cWW
4	J3_8GLP_025	8GLP	0.0000	0	L5+L8	LSU rRNA + 5.8S rRNA	U	380	U	381	G	382	A	383	A	384	A	385	A	386	G	387	*	C	414	G	415	*	C	19	A	20	cWW	tWH	tSH	cWW	cWW
5	J3_9H3G_001	9H3G	0.0460	0	A+3	LSU rRNA	A	366	U	367	G	368	A	369	A	370	A	371	A	372	G	373	*	C	400	U	401	*	A	23	U	24	cWW	tWH	tSH	cWW	cWW
6	J3_9SUM_004	9SUM	0.0705	0	A+C	LSU rRNA + 5.8S rRNA	A	359	U	360	G	361	A	362	A	363	A	364	A	365	G	366	*	C	393	G	394	*	C	19	U	20	cWW	tWH	tSH	cWW	cWW
7	J3_9PN5_005	9PN5	0.0764	0	A1+A4	LSU rRNA + 5.8S rRNA	A	369	U	370	G	371	A	372	A	373	A	374	A	375	G	376	*	C	403	G	404	*	C	19	U	20	cWW	tWH	tSH	cWW	cWW
8	J3_9AXU_005	9AXU	0.0790	0	2+4	LSU rRNA + 5.8S rRNA	A	377	U	378	G	379	A	380	A	381	A	382	A	383	G	384	*	C	411	G	412	*	C	27	U	28	cWW	tWH	tSH	cWW	cWW
9	J3_8OI5_005	8OI5	0.0993	0	1+4	LSU rRNA + 5.8S rRNA	A	369	U	370	G	371	A	372	A	373	A	374	A	375	G	376	*	C	403	G	404	*	C	19	U	20	cWW	tWH	tSH	cWW	cWW
10	J3_9E6Q_001	9E6Q	0.1003	0	1	LSU rRNA	C	505	U	506	G	507	A	508	A	509	A	510	A	511	G	512	*	C	538	C	539	*	G	23	G	24	cWW	tWH	tSH	cWW	cWW
11	J3_4V9F_011	4V9F	0.1140	0	0	LSU rRNA	C	480	U	481	G	482	C	483	A	484	A	485	A	486	G	487	*	C	515	A	516	*	U	27	G	28	cWW	tWH	tSH	cWW	cWW
12	J3_7A0S_001	7A0S	0.1366	0	X	LSU rRNA	G	485	U	486	G	487	A	488	A	489	A	490	A	491	G	492	*	C	519	C	520	*	G	30	C	31	cWW	tWH	ntSH	cWW	cWW

3D structures

Complete motif including flanking bases

Sequence	Counts
AUGAAAAGCGCU	4
GCGUGAAAAGCC	3
GCGCGAAAAGCC	1
UUGAAAAGCGCA	1
AUAUGAAAAGCU	1
GGCUGAAAAGCC	1
UGCUGCAAAGCA	1

Non-Watson-Crick part of the motif

Sequence	Counts
UGAAAA	5
UGAAAA**	5
CGAAAA	1
UGCAAA	1

Release history

Release	4.14
Date	2026-09-09
Status	Updated, 1 parent

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.

Annotations: (12)
Basepair signature: cWW-tWH-cWW-tSH-F-cWW-F
Heat map statistics: Min 0.04 | Avg 0.11 | Max 0.18

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Coloring options: Nucleotide numbers

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