J3_11KH_023
3D structure
- PDB id
- 11KH (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit 80S with IFRD2 and LARP1, 40S head-swiveled
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- GAAG*CCAUAUC*GUC
- Length
- 14 nucleotides
- Bulged bases
- 11KH|1|28|U|2788, 11KH|1|28|A|2789, 11KH|1|28|U|2790
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_11KH_023 not in the Motif Atlas
- Homologous match to J3_8GLP_005
- Geometric discrepancy: 0.2124
- The information below is about J3_8GLP_005
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_76012.4
- Basepair signature
- cWW-F-tHW-tHS-tWW-cWW-cWW-F
- Number of instances in this motif group
- 7
Unit IDs
11KH|1|28|G|2402
11KH|1|28|A|2403
11KH|1|28|A|2404
11KH|1|28|G|2405
*
11KH|1|28|C|2785
11KH|1|28|C|2786
11KH|1|28|A|2787
11KH|1|28|U|2788
11KH|1|28|A|2789
11KH|1|28|U|2790
11KH|1|28|C|2791
*
11KH|1|28|G|2800
11KH|1|28|U|2801
11KH|1|28|C|2802
Current chains
- Chain 28
- 28S rRNA
Nearby chains
- Chain 34
- 60S ribosomal protein L34
- Chain 37
- 60S ribosomal protein L37
- Chain 39
- 60S ribosomal protein L39
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