Motif J3_76012.4 Version J3_76012.4 of this group appears in releases 4.14 to 4.14
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | break | 5 | 6 | 7 | 8 | 9 | break | 10 | 11 | 12 | 1-12 | 3-6 | 3-7 | 4-5 | 7-11 | 9-10 | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | J3_8OI5_013 | 8OI5 | 0.0924 | 2 | 1 | LSU rRNA | G | 1484 | A | 1485 | A | 1486 | A | 1487 | * | U | 1833 | C | 1834 | A | 1835 | A | 1838 | C | 1839 | * | G | 1848 | U | 1849 | C | 1850 | cWW | ntHS | ntWW | cWW | tHW | cWW |
| 2 | J3_9AXU_014 | 9AXU | 0.0685 | 2 | 2 | LSU rRNA | G | 1522 | A | 1523 | A | 1524 | A | 1525 | * | U | 1892 | C | 1893 | A | 1894 | A | 1897 | C | 1898 | * | G | 1907 | U | 1908 | C | 1909 | cWW | ntHS | ntWW | cWW | tHW | cWW |
| 3 | J3_9PN5_013 | 9PN5 | 0.0000 | 2 | A1 | LSU rRNA | G | 1488 | A | 1489 | A | 1490 | A | 1491 | * | U | 1837 | G | 1838 | A | 1839 | A | 1842 | C | 1843 | * | G | 1852 | U | 1853 | C | 1854 | cWW | tHS | tWW | cWW | tHW | cWW |
| 4 | J3_9SUM_012 | 9SUM | 0.0421 | 2 | A | LSU rRNA | G | 1431 | A | 1432 | A | 1433 | A | 1434 | * | U | 1779 | G | 1780 | A | 1781 | A | 1784 | C | 1785 | * | G | 1794 | U | 1795 | C | 1796 | cWW | tHS | ntWW | cWW | tHW | cWW |
| 5 | J3_9H3G_016 | 9H3G | 0.0735 | 2 | A | LSU rRNA | G | 1497 | A | 1498 | A | 1499 | A | 1500 | * | U | 1839 | C | 1840 | A | 1841 | A | 1844 | OMC | 1845 | * | G | 1854 | U | 1855 | C | 1856 | cWW | ntHS | ntWW | cWW | tHW | cWW |
| 6 | J3_8GLP_005 | 8GLP | 0.0855 | 2 | L5 | LSU rRNA | G | 2402 | A | 2403 | A | 2404 | G | 2405 | * | C | 2785 | C | 2786 | A2M | 2787 | U | 2790 | C | 2791 | * | G | 2800 | U | 2801 | C | 2802 | cWW | ntHS | ntWW | cWW | tHW | cWW |
| 7 | J3_4V9F_006 | 4V9F | 0.0994 | 2 | 0 | LSU rRNA | U | 1412 | A | 1413 | A | 1414 | G | 1415 | * | C | 1680 | G | 1681 | A | 1682 | A | 1685 | C | 1686 | * | G | 1695 | U | 1696 | G | 1697 | cWW | tHS | tWW | cWW | tHW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GAAA*UCAUAAC*GUC | 2 |
| GAAA*UGAUAAC*GUC | 2 |
| GAAA*UCAUAAOMC*GUC | 1 |
| GAAG*CC(A2M)UAUC*GUC | 1 |
| UAAG*CGAGAAC*GUG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| AA*CAUAA*U | 3 |
| AA*GAUAA*U | 2 |
| AA*C(A2M)UAU*U | 1 |
| AA*GAGAA*U | 1 |
Release history
| Release | 4.14 |
|---|---|
| Date | 2026-09-09 |
| Status | Updated, 1 parent |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (7)
- Basepair signature
- cWW-F-tHW-tHS-tWW-cWW-cWW-F
- Heat map statistics
- Min 0.04 | Avg 0.07 | Max 0.13
Coloring options: