J3_11KH_025

3D structure

PDB id

11KH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S with IFRD2 and LARP1, 40S head-swiveled

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

AGAUGG*CGUUCCGAAGGG*CAGCCGAU

Length

26 nucleotides

Bulged bases

11KH|1|28|C|2470, 11KH|1|28|A|2472, 11KH|1|28|G|2475

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_11KH_025 not in the Motif Atlas

Homologous match to J3_8GLP_031

Geometric discrepancy: 0.4035

The information below is about J3_8GLP_031

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_53783.2

Basepair signature

cWW-tSH-tHW-F-tWW-F-tHS-F-cWW-cWW-F-tWW-F

Number of instances in this motif group

3

Unit IDs

11KH|1|28|A|2451
11KH|1|28|G|2452
11KH|1|28|A|2453
11KH|1|28|U|2454
11KH|1|28|G|2455
11KH|1|28|G|2456
*
11KH|1|28|C|2465
11KH|1|28|G|2466
11KH|1|28|U|2467
11KH|1|28|U|2468
11KH|1|28|C|2469
11KH|1|28|C|2470
11KH|1|28|G|2471
11KH|1|28|A|2472
11KH|1|28|A|2473
11KH|1|28|G|2474
11KH|1|28|G|2475
11KH|1|28|G|2476
*
11KH|1|28|C|2501
11KH|1|28|A|2502
11KH|1|28|G|2503
11KH|1|28|C|2504
11KH|1|28|C|2505
11KH|1|28|G|2506
11KH|1|28|A|2507
11KH|1|28|U|2508

Current chains

Chain 28

28S rRNA

Nearby chains

Chain 15

60S ribosomal protein L15

Chain 37

60S ribosomal protein L37

Chain 58

5.8S ribosomal RNA; 5.8S rRNA

Chain L8

60S ribosomal protein L8

Chain aa

Large ribosomal subunit protein eL8

Chain cc

Large ribosomal subunit protein uL23