J3_11KH_026

3D structure

PDB id

11KH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S with IFRD2 and LARP1, 40S head-swiveled

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

AGAUG*CAGU*AGGGUGUAAAU

Length

20 nucleotides

Bulged bases

11KH|1|28|U|2763

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_11KH_026 not in the Motif Atlas

Homologous match to J3_8GLP_006

Geometric discrepancy: 0.2511

The information below is about J3_8GLP_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

11KH|1|28|A|2551
11KH|1|28|G|2552
11KH|1|28|A|2553
11KH|1|28|U|2554
11KH|1|28|G|2555
*
11KH|1|28|C|2572
11KH|1|28|A|2573
11KH|1|28|G|2574
11KH|1|28|U|2575
*
11KH|1|28|A|2757
11KH|1|28|G|2758
11KH|1|28|G|2759
11KH|1|28|G|2760
11KH|1|28|U|2761
11KH|1|28|G|2762
11KH|1|28|U|2763
11KH|1|28|A|2764
11KH|1|28|A|2765
11KH|1|28|A|2766
11KH|1|28|U|2767

Current chains

Chain 28

28S rRNA

Nearby chains

Chain 27

60S ribosomal protein L27