J3_11KH_028
3D structure
- PDB id
- 11KH (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit 80S with IFRD2 and LARP1, 40S head-swiveled
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- CGG*CUGAC*GGACAG
- Length
- 14 nucleotides
- Bulged bases
- 11KH|1|28|G|4076
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_11KH_028 not in the Motif Atlas
- Homologous match to J3_8GLP_007
- Geometric discrepancy: 0.1257
- The information below is about J3_8GLP_007
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_17460.1
- Basepair signature
- cWW-tHH-cWW-F-tWH-tHS-cWW
- Number of instances in this motif group
- 5
Unit IDs
11KH|1|28|C|3937
11KH|1|28|G|3938
11KH|1|28|G|3939
*
11KH|1|28|C|4074
11KH|1|28|U|4075
11KH|1|28|G|4076
11KH|1|28|A|4077
11KH|1|28|C|4078
*
11KH|1|28|G|4168
11KH|1|28|G|4169
11KH|1|28|A|4170
11KH|1|28|C|4171
11KH|1|28|A|4172
11KH|1|28|G|4173
Current chains
- Chain 28
- 28S rRNA
Nearby chains
- Chain 15
- 60S ribosomal protein L15
- Chain L8
- 60S ribosomal protein L8
- Chain aa
- Large ribosomal subunit protein eL8
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