Motif J3_17460.1 Version J3_17460.1 of this group appears in releases 4.0 to 4.14
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name for chain | 1 | 2 | 3 | break | 4 | 5 | 6 | 7 | break | 8 | 9 | 10 | 11 | 12 | 13 | 1-13 | 2-12 | 3-4 | 5-10 | 6-9 | 7-8 | 7-11 | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | J3_9E6Q_014 | 9E6Q | 0.1522 | 1 | 1 | LSU rRNA | U | 2211 | U | 2212 | G | 2213 | * | C | 2315 | U | 2316 | A | 2318 | C | 2319 | * | G | 2334 | G | 2335 | A | 2336 | C | 2337 | A | 2338 | G | 2339 | cWW | tHH | cWW | tWH | tHS | cWW | ntSW | |
| 2 | J3_9DFE_014 | 9DFE | 0.0000 | 1 | 1A | LSU rRNA | U | 2091 | U | 2092 | G | 2093 | * | C | 2196 | U | 2197 | A | 2199 | C | 2200 | * | G | 2223 | G | 2224 | A | 2225 | C | 2226 | A | 2227 | G | 2228 | cWW | tHH | cWW | tWH | tHS | cWW | ||
| 3 | J3_8B0X_021 | 8B0X | 0.1280 | 1 | Kink-turn 3-way junction (H) | a | LSU rRNA | C | 2095 | U | 2096 | G | 2097 | * | C | 2200 | U | 2201 | A | 2203 | C | 2204 | * | G | 2227 | G | 2228 | A | 2229 | C | 2230 | A | 2231 | G | 2232 | cWW | tHH | cWW | tWH | tHS | cWW | |
| 4 | J3_8GLP_007 | 8GLP | 0.1436 | 1 | L5 | LSU rRNA | C | 3937 | G | 3938 | G | 3939 | * | C | 4074 | U | 4075 | A | 4077 | C | 4078 | * | G | 4168 | G | 4169 | A | 4170 | C | 4171 | A | 4172 | G | 4173 | cWW | tHH | cWW | tWH | tHS | cWW | ntSW | |
| 5 | J3_7A0S_009 | 7A0S | 0.1575 | 1 | X | LSU rRNA | U | 2074 | U | 2075 | G | 2076 | * | C | 2179 | U | 2180 | A | 2182 | C | 2183 | * | G | 2202 | G | 2203 | A | 2204 | C | 2205 | C | 2206 | G | 2207 | cWW | tHH | cWW | tWH | tHS | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| UUG*CUUAC*GGACAG | 1 |
| UUG*CUAAC*GGACAG | 1 |
| CUG*CUAAC*GGACAG | 1 |
| CGG*CUGAC*GGACAG | 1 |
| UUG*CUAAC*GGACCG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| U*UAA*GACA | 2 |
| U*UUA*GACA | 1 |
| G*UGA*GACA | 1 |
| U*UAA*GACC | 1 |
Release history
| Release | 4.0 | 4.1 | 4.2 | 4.3 | 4.4 | 4.5 | 4.6 | 4.7 | 4.8 | 4.9 | 4.10 | 4.11 | 4.12 | 4.13 | 4.14 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2025-08-13 | 2025-09-10 | 2025-10-08 | 2025-11-05 | 2025-12-03 | 2025-12-31 | 2026-01-28 | 2026-02-25 | 2026-03-25 | 2026-04-22 | 2026-05-20 | 2026-06-17 | 2026-07-15 | 2026-08-12 | 2026-09-09 |
| Status | New id, 1 parent | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (4)
- Kink-turn 3-way junction (H) (1)
- Basepair signature
- cWW-tHH-cWW-F-tWH-tHS-cWW
- Heat map statistics
- Min 0.13 | Avg 0.12 | Max 0.20
Coloring options: