J3_12DP_009

3D structure

PDB id

12DP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with sparsomycin, mRNA, and aminoacylated initiator P-site fMet-tRNAmet at 2.95A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.95 Å

Loop

Sequence

GGA*UUUAAAG*CAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_12DP_009 not in the Motif Atlas

Homologous match to J3_1MMS_002

Geometric discrepancy: 0.2841

The information below is about J3_1MMS_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_37832.2

Basepair signature

cWW-tSS-cSS-tSH-cWW-cWW-tWW-F-F

Number of instances in this motif group

4

Unit IDs

12DP|1|1A|G|1055
12DP|1|1A|G|1056
12DP|1|1A|A|1057
*
12DP|1|1A|U|1081
12DP|1|1A|U|1082
12DP|1|1A|U|1083
12DP|1|1A|A|1084
12DP|1|1A|A|1085
12DP|1|1A|A|1086
12DP|1|1A|G|1087
*
12DP|1|1A|C|1102
12DP|1|1A|A|1103
12DP|1|1A|C|1104

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 19

50S ribosomal protein L36