Motif J3_37832.2 Version J3_37832.2 of this group appears in releases 4.10 to 4.10
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name for chain | 1 | 2 | 3 | break | 4 | 5 | 6 | 7 | 8 | 9 | 10 | break | 11 | 12 | 13 | 1-8 | 1-13 | 2-12 | 3-4 | 5-9 | 8-13 | 10-11 | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | J3_6PRV_001 | 6PRV | 0.1054 | 0 | A | LSU rRNA | G | 1055 | G | 1056 | A | 1057 | * | U | 1081 | U | 1082 | U | 1083 | A | 1084 | A | 1085 | A | 1086 | G | 1087 | * | C | 1102 | A | 1103 | C | 1104 | tsS | cWW | tSH | cWW | tWW | cSs | cWW |
| 2 | J3_1MMS_002 | 1MMS | 0.0000 | 0 | D | LSU rRNA | G | 1055 | G | 1056 | A | 1057 | * | U | 1081 | U | 1082 | U | 1083 | A | 1084 | A | 1085 | A | 1086 | G | 1087 | * | C | 1102 | A | 1103 | C | 1104 | tsS | cWW | tSH | cWW | tWW | ncSs | cWW |
| 3 | J3_5D8H_001 | 5D8H | 0.0928 | 0 | A | LSU rRNA | G | 1165 | G | 1166 | A | 1167 | * | U | 1191 | U | 1192 | U | 1193 | A | 1194 | A | 1195 | A | 1196 | G | 1197 | * | C | 1212 | A | 1213 | C | 1214 | tsS | cWW | tSH | cWW | tWW | ncSs | cWW |
| 4 | J3_4V9F_004 | 4V9F | 0.1292 | 0 | 0 | LSU rRNA | G | 1159 | G | 1160 | A | 1161 | * | U | 1185 | C | 1186 | U | 1187 | A | 1188 | A | 1189 | G | 1190 | A | 1191 | * | U | 1206 | A | 1207 | C | 1208 | tsS | cWW | cWW | tWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GGA*UUUAAAG*CAC | 3 |
| GGA*UCUAAGA*UAC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| G*UUAAA*A | 3 |
| G*CUAAG*A | 1 |
Release history
| Release | 4.10 |
|---|---|
| Date | 2026-05-20 |
| Status | Updated, 1 parent |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (4)
- Basepair signature
- cWW-tSS-cSS-tSH-cWW-cWW-tWW-F-F
- Heat map statistics
- Min 0.09 | Avg 0.09 | Max 0.13
Coloring options: