J3_12DP_016
3D structure
- PDB id
- 12DP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with sparsomycin, mRNA, and aminoacylated initiator P-site fMet-tRNAmet at 2.95A resolution
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.95 Å
Loop
- Sequence
- CUC*GAG*UAGAAG
- Length
- 12 nucleotides
- Bulged bases
- 12DP|1|1A|G|2334, 12DP|1|1A|A|2336
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_12DP_016 not in the Motif Atlas
- Homologous match to J3_7A0S_010
- Geometric discrepancy: 0.2931
- The information below is about J3_7A0S_010
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_05327.4
- Basepair signature
- cWW-tWH-tWW-cWW-F-cWW
- Number of instances in this motif group
- 12
Unit IDs
12DP|1|1A|C|2295
12DP|1|1A|U|2296
12DP|1|1A|C|2297
*
12DP|1|1A|G|2321
12DP|1|1A|A|2322
12DP|1|1A|G|2323
*
12DP|1|1A|U|2332
12DP|1|1A|A|2333
12DP|1|1A|G|2334
12DP|1|1A|A|2335
12DP|1|1A|A|2336
12DP|1|1A|G|2337
Current chains
- Chain 1A
- 23S Ribosomal RNA
Nearby chains
- Chain 10
- 50S ribosomal protein L27
- Chain 1B
- 5S ribosomal RNA; 5S rRNA
- Chain 1G
- 50S ribosomal protein L5
- Chain 1S
- 50S ribosomal protein L18
- Chain 1x
- Transfer RNA; tRNA
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