J3_12DP_048

3D structure

PDB id

12DP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with sparsomycin, mRNA, and aminoacylated initiator P-site fMet-tRNAmet at 2.95A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.95 Å

Loop

Sequence

GGGACG*CC*GAAAAGC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_12DP_048 not in the Motif Atlas

Homologous match to J3_8B0X_035

Geometric discrepancy: 0.0809

The information below is about J3_8B0X_035

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_34864.3

Basepair signature

cWW-tSH-tSH-tHH-F-F-cWW-F-cWW

Number of instances in this motif group

4

Unit IDs

12DP|1|2A|G|1424
12DP|1|2A|G|1425
12DP|1|2A|G|1426
12DP|1|2A|A|1427
12DP|1|2A|C|1428
12DP|1|2A|G|1429
*
12DP|1|2A|C|1564
12DP|1|2A|C|1565
*
12DP|1|2A|G|1568
12DP|1|2A|A|1569
12DP|1|2A|A|1570
12DP|1|2A|A|1571
12DP|1|2A|A|1572
12DP|1|2A|G|1573
12DP|1|2A|C|1574

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 2D

50S ribosomal protein L2