J3_8B0X_035

3D structure

PDB id

8B0X (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translating 70S ribosome in the unrotated state (P and E, tRNAs)

Experimental method

ELECTRON MICROSCOPY

Resolution

1.55 Å

Loop

Sequence

GGGACG*CC*GAAAAGC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8B0X_035 not in the Motif Atlas

Homologous match to J3_5J7L_069

Geometric discrepancy: 0.0481

The information below is about J3_5J7L_069

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_34864.2

Basepair signature

cWW-F-cWW-F-tHH-F-tHS-tHS-cWW

Number of instances in this motif group

4

Unit IDs

8B0X|1|a|G|1426
8B0X|1|a|G|1427
8B0X|1|a|G|1428
8B0X|1|a|A|1429
8B0X|1|a|C|1430
8B0X|1|a|G|1431
*
8B0X|1|a|C|1566
8B0X|1|a|C|1567
*
8B0X|1|a|G|1570
8B0X|1|a|A|1571
8B0X|1|a|A|1572
8B0X|1|a|A|1573
8B0X|1|a|A|1574
8B0X|1|a|G|1575
8B0X|1|a|C|1576

Current chains

Chain a

23S rRNA

Nearby chains

Chain c

50S ribosomal protein L2