J3_12DP_056

3D structure

PDB id

12DP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with sparsomycin, mRNA, and aminoacylated initiator P-site fMet-tRNAmet at 2.95A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.95 Å

Loop

Sequence

GCCUAAG*UAGGAAUCU*AGC

Length

19 nucleotides

Bulged bases

12DP|1|2a|C|48, 12DP|1|2a|A|50, 12DP|1|2a|A|51

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_12DP_056 not in the Motif Atlas

Homologous match to J3_8B0X_027

Geometric discrepancy: 0.1042

The information below is about J3_8B0X_027

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_63856.4

Basepair signature

cWW-cWW-cSW-F-cWW-F-cWS-tHH-tSS-cWW-F-F

Number of instances in this motif group

7

Unit IDs

12DP|1|2a|G|46
12DP|1|2a|C|47
12DP|1|2a|C|48
12DP|1|2a|U|49
12DP|1|2a|A|50
12DP|1|2a|A|51
12DP|1|2a|G|52
*
12DP|1|2a|U|359
12DP|1|2a|A|360
12DP|1|2a|G|361
12DP|1|2a|G|362
12DP|1|2a|A|363
12DP|1|2a|A|364
12DP|1|2a|U|365
12DP|1|2a|C|366
12DP|1|2a|U|367
*
12DP|1|2a|A|393
12DP|1|2a|G|394
12DP|1|2a|C|395

Current chains

Chain 2a

16S Ribosomal RNA

Nearby chains

Chain 2l

30S ribosomal protein S12

Chain 2p

30S ribosomal protein S16