Motif J3_63856.4 Version J3_63856.4 of this group appears in releases 4.14 to 4.14
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 5 | 6 | 7 | break | 8 | 9 | 10 | 11 | 12 | 13 | 14 | 15 | 16 | break | 17 | 18 | 19 | 1-19 | 2-10 | 4-11 | 4-14 | 5-9 | 5-11 | 5-14 | 6-9 | 7-8 | 15-18 | 16-17 | |||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | J3_8B0X_027 | 8B0X | 0.7911 | 0 | A | SSU rRNA | G | 46 | C | 47 | C | 48 | U | 49 | A | 50 | A | 51 | C | 52 | * | G | 359 | G | 360 | G | 361 | G | 362 | A | 363 | A | 364 | U | 365 | A | 366 | U | 367 | * | A | 393 | G | 394 | C | 395 | cWW | cWW | cWS | tHW | ntSs | cWW | cSW | cWW | |||
| 2 | J3_4LFB_014 | 4LFB | 0.7915 | 0 | A | SSU rRNA | G | 46 | C | 47 | C | 48 | U | 49 | A | 50 | A | 51 | G | 52 | * | U | 359 | A | 360 | G | 361 | G | 362 | A | 363 | A | 364 | U | 365 | C | 366 | U | 367 | * | A | 393 | G | 394 | C | 395 | cWW | cWW | cWS | tHW | cWW | cSW | cWW | ||||
| 3 | J3_8GLP_041 | 8GLP | 0.0508 | 1 | S2 | SSU rRNA | A | 40 | G | 41 | A | 42 | U | 43 | U | 44 | A | 45 | G | 47 | * | C | 479 | G | 480 | C | 481 | G | 482 | C | 483 | A2M | 484 | A | 485 | A | 486 | U | 487 | * | A2M | 512 | G | 513 | U | 514 | cWW | cWW | ncWS | tHH | ntSs | cWW | cSW | cWW | |||
| 4 | J3_9H3G_029 | 9H3G | 0.0475 | 1 | h1 | SSU rRNA | A | 41 | G | 42 | A | 43 | U | 44 | U | 45 | A | 46 | G | 48 | * | C | 433 | G | 434 | C | 435 | G | 436 | C | 437 | A2M | 438 | A | 439 | A | 440 | U | 441 | * | A2M | 466 | G | 467 | PSU | 468 | cWW | cWW | cWS | tHH | ntSs | cWW | cSW | cWW | |||
| 5 | J3_9PN5_028 | 9PN5 | 0.0434 | 1 | B5 | SSU rRNA | A | 41 | G | 42 | A | 43 | U | 44 | U | 45 | A | 46 | G | 48 | * | C | 431 | G | 432 | C | 433 | G | 434 | C | 435 | A | 436 | A | 437 | A | 438 | U | 439 | * | A | 464 | G | 465 | PSU | 466 | cWW | cWW | cWS | tHH | ntSs | cWW | cSW | cWW | |||
| 6 | J3_9SUM_027 | 9SUM | 0.0000 | 1 | CA | SSU rRNA | A | 41 | G | 42 | A | 43 | U | 44 | U | 45 | A | 46 | G | 48 | * | C | 420 | G | 421 | C | 422 | G | 423 | C | 424 | A | 425 | A | 426 | A | 427 | U | 428 | * | A | 453 | G | 454 | U | 455 | cWW | cWW | cWS | tHH | ntSs | cWW | cSW | cWW | |||
| 7 | J3_8CRE_072 | 8CRE | 0.0548 | 1 | CM | SSU rRNA | A | 41 | G | 42 | A | 43 | U | 44 | U | 45 | A | 46 | G | 48 | * | C | 429 | G | 430 | C | 431 | G | 432 | C | 433 | A | 434 | A | 435 | A | 436 | U | 437 | * | A | 462 | G | 463 | U | 464 | cWW | cWW | ncWS | tHH | tSs | cWW | cSW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| AGAUUAAG*CGCGCAAAU*AGU | 2 |
| GCCUAAC*GGGGAAUAU*AGC | 1 |
| GCCUAAG*UAGGAAUCU*AGC | 1 |
| AGAUUAAG*CGCGC(A2M)AAU*A2MGU | 1 |
| AGAUUAAG*CGCGC(A2M)AAU*A2MGPSU | 1 |
| AGAUUAAG*CGCGCAAAU*AGPSU | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GAUUAA*GCGCAAA*G | 3 |
| GAUUAA*GCGC(A2M)AA*G | 2 |
| CCUAA*GGGAAUA*G | 1 |
| CCUAA*AGGAAUC*G | 1 |
Release history
| Release | 4.14 |
|---|---|
| Date | 2026-09-09 |
| Status | Updated, 1 parent |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (7)
- Basepair signature
- cWW-cWW-cSW-F-cWW-F-cWS-tHH-tSS-cWW-F-F
- Heat map statistics
- Min 0.04 | Avg 0.35 | Max 0.80
Coloring options: