J3_12DP_060

3D structure

PDB id

12DP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with sparsomycin, mRNA, and aminoacylated initiator P-site fMet-tRNAmet at 2.95A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.95 Å

Loop

Sequence

CUAG*CGAAG*CGUUAAG

Length

16 nucleotides

Bulged bases

12DP|1|2a|U|871, 12DP|1|2a|A|873

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_12DP_060 not in the Motif Atlas

Homologous match to J3_8B0X_004

Geometric discrepancy: 0.2132

The information below is about J3_8B0X_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_02285.1

Basepair signature

cWW-tWW-tHS-F-cWW-tHS-cWW-F

Number of instances in this motif group

2

Unit IDs

12DP|1|2a|C|826
12DP|1|2a|U|827
12DP|1|2a|A|828
12DP|1|2a|G|829
*
12DP|1|2a|C|857
12DP|1|2a|G|858
12DP|1|2a|A|859
12DP|1|2a|A|860
12DP|1|2a|G|861
*
12DP|1|2a|C|868
12DP|1|2a|G|869
12DP|1|2a|U|870
12DP|1|2a|U|871
12DP|1|2a|A|872
12DP|1|2a|A|873
12DP|1|2a|G|874

Current chains

Chain 2a

16S Ribosomal RNA

Nearby chains

Chain 2b

30S ribosomal protein S2

Chain 2e

30S ribosomal protein S5

Chain 2h

30S ribosomal protein S8