Motif J3_02285.1 Version J3_02285.1 of this group appears in releases 4.0 to 4.0
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | break | 5 | 6 | 7 | 8 | 9 | break | 10 | 11 | 12 | 13 | 14 | 1-14 | 2-7 | 2-13 | 3-6 | 4-5 | 8-11 | 8-13 | 9-10 | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | J3_4LFB_001 | 4LFB | 0.0000 | 2 | A | SSU rRNA | C | 826 | U | 827 | A | 828 | G | 829 | * | C | 857 | G | 858 | A | 859 | A | 860 | G | 861 | * | C | 868 | G | 869 | U | 870 | A | 872 | G | 874 | cWW | cSW | tWW | tHS | cWW | tHS | ntWH | cWW |
| 2 | J3_8B0X_004 | 8B0X | 0.2103 | 2 | A | SSU rRNA | C | 826 | U | 827 | U | 828 | G | 829 | * | C | 857 | G | 858 | G | 859 | A | 860 | G | 861 | * | C | 868 | G | 869 | U | 870 | A | 872 | G | 874 | cWW | tWW | tHS | cWW | tHS | ntWH | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CUAG*CGAAG*CGUUAAG | 1 |
| CUUG*CGGAG*CGUUAAG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UA*GAA*GUUAA | 1 |
| UU*GGA*GUUAA | 1 |
Release history
| Release | 4.0 |
|---|---|
| Date | 2025-08-13 |
| Status | New id, 1 parent |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (2)
- Basepair signature
- cWW-tWW-tHS-F-cWW-tHS-cWW-F
- Heat map statistics
- Min 0.21 | Avg 0.11 | Max 0.21
Coloring options: