J3_12DP_062

3D structure

PDB id

12DP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with sparsomycin, mRNA, and aminoacylated initiator P-site fMet-tRNAmet at 2.95A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.95 Å

Loop

Sequence

UGGA*UAC*GGAA

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_12DP_062 not in the Motif Atlas

Homologous match to J3_8B0X_006

Geometric discrepancy: 0.1094

The information below is about J3_8B0X_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_44359.4

Basepair signature

cWW-tSH-cWW-F-cWW-cWW

Number of instances in this motif group

7

Unit IDs

12DP|1|2a|U|943
12DP|1|2a|G|944
12DP|1|2a|G|945
12DP|1|2a|A|946
*
12DP|1|2a|U|1235
12DP|1|2a|A|1236
12DP|1|2a|C|1237
*
12DP|1|2a|G|1337
12DP|1|2a|G|1338
12DP|1|2a|A|1339
12DP|1|2a|A|1340

Current chains

Chain 2a

16S Ribosomal RNA

Nearby chains

Chain 2i

30S ribosomal protein S9

Chain 2m

30S ribosomal protein S13

Chain 2u

30S ribosomal protein Thx

Chain 2x

Transfer RNA; tRNA